rs107982169 SNP Detail

Summary

• ID
  rs107982169
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127740750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCAGATT AGAGGCATTT
  CTTCTCAGTC ATCTGGGAGT ATAAGATGTG TGTGTGTGAG TGTGTGTGTG TGTGTGCGTG
  CGCGCGTGTG CATGCCTGCG TGCGCATGCG TGCGTGCATG TGTGTGTGAC AGCTTCCAAG
  TTCCTTTTCC CACAGTCCCT TAAGCTTACA TAAATGCTCT CAAAAATCAT CCCCAAGCAA
  W
  CAGTGATAGA ATAAACAGTG TTTCAGGGCT TCTCTCCTTC ACTGAAGGGC TAGCGAAAGA
  ATTCTGGGAA GTCTTCCTCT CTAGAGGGTT CAGTGCCAAT GGCCTTTGAG TATAAACAGT
  ACTAAGTTTA GAATTTGTGT ATATCTCAAC TTAACCTCAG CTCATGGTTA TCACAACAAA
  GAACTCCGAT ACATGGTTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135875915	ENSMUSSNP984540	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
ss320958533	CHEV_3_127650019	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs107982169					SNP	T	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127740750 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr398010	regulatory region 398010	1920 bp upstream
Rr584909	regulatory region 584909	1333 bp proximal
Rr584910	regulatory region 584910	1772 bp proximal
Rr584911	regulatory region 584911	1999 bp proximal