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rs107982169 SNP Detail
Summary
  • ID
    rs107982169
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr3:127740750 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAGGCAGATT AGAGGCATTT
    CTTCTCAGTC ATCTGGGAGT ATAAGATGTG TGTGTGTGAG TGTGTGTGTG TGTGTGCGTG
    CGCGCGTGTG CATGCCTGCG TGCGCATGCG TGCGTGCATG TGTGTGTGAC AGCTTCCAAG
    TTCCTTTTCC CACAGTCCCT TAAGCTTACA TAAATGCTCT CAAAAATCAT CCCCAAGCAA
    W
    CAGTGATAGA ATAAACAGTG TTTCAGGGCT TCTCTCCTTC ACTGAAGGGC TAGCGAAAGA
    ATTCTGGGAA GTCTTCCTCT CTAGAGGGTT CAGTGCCAAT GGCCTTTGAG TATAAACAGT
    ACTAAGTTTA GAATTTGTGT ATATCTCAAC TTAACCTCAG CTCATGGTTA TCACAACAAA
    GAACTCCGAT ACATGGTTTC                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
ss135875915 ENSMUSSNP984540 ENSEMBL ENSEMBL_Sanger f SNP T T A
ss320958533 CHEV_3_127650019 CHEVERUD SCREENING_POP f SNP A T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
rs107982169 SNP T T A A T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:127740750 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
9830132P13Rik RIKEN cDNA 9830132P13 gene within coordinates
Rr398010 regulatory region 398010 1920 bp upstream
Rr584909 regulatory region 584909 1333 bp proximal
Rr584910 regulatory region 584910 1772 bp proximal
Rr584911 regulatory region 584911 1999 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory