rs107980648 SNP Detail

Summary

• ID
  rs107980648
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152048852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTGGTGC AGTGCTAAGG
  GCTTGTGGCT TTTGGAACCT CTAAACCTAT TCCAGGAAGC TCACACCTTC TCAGTCTCCG
  CAGACAGCCA CCCACGGCAT CGAGTATTCA AATGCCAAAG GCTTATGGGA TATATCTTAC
  TCAAACGGCC ACAATGTGTG TGTGTGTGTG TACACGTGTG TGTGTGTGCA TGTGCATGCG
  Y
  GTGTGCCTGC TTGAATTTCT GTGTACCGCA TGCGTGCAGG AACCTAAGGA GGCCAGAAAA
  GGGCATCAAA TCTCTTAGAC TTGGAATTAC AAGTGTTTGT GAGCCGCCAA GTGGCTGCTG
  GGAAACTAAC TCAGGTCCTC TACGGATTCT GGGAAACACT CTCAGCTGCT CTTCAAGAGC
  ATCAAGTGCT CTTAATGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136102542	ENSMUSSNP5050576	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107980648					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152048852 () rs orientation: forward

Symbol	Name	Function Class
Rr587533	regulatory region 587533	within coordinates