rs107971806 SNP Detail

Summary

• ID
  rs107971806
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150572187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGTTGTT TTTTTGTTTT
  GTTTTGTTTT TCCAAGTATG CTGAGGTGTT TATAGTGGAT GGTCTTTAGG CATTTGGGGG
  GAGGGGCATA TGCATGCACG TTCACTTAAC TGAGGGGGGG TTAGTGTCAG CCAACCATTA
  TGGTTCATGC TAGGTTAGTG CTCTGCTGCT GAGGTTATTT CCCCCCCCCC CCCCCATCCT
  Y
  GATCTGAACC TTGTTGCTGT TTTTATTGTT TCAGTTCATT CTTGGAGACC TGGCTGGGCT
  CATATTAATT ACCTTAGAGG ATGCTGTAAT TTAATCACTT GGAGATTTGG GGGTTCTTTT
  TGCATGAAGT ATGGCATTCC TTGTGTGCTG TATTAGTGCT GTCTCCATTG TGGCCATACC
  TATGTGGCTA GCTTGCTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148053795	ENSMUSSNP383898	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs107971806					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150572187 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rere	arginine glutamic acid dipeptide (RE) repeats			Intron
				mRNA-UTR
Rr605316	regulatory region 605316			1246 bp distal
Rr605317	regulatory region 605317			173 bp proximal
Rr605318	regulatory region 605318			674 bp proximal
Tssr40412	transcription start site region 40412			638 bp upstream