rs107959988 SNP Detail

Summary

• ID
  rs107959988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78500910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAAATATT TGTCTTTATA
  ACCACAAATA AGTGTAGTCC TCAGCCCTGA TCAAAACATA AGTCTCTTGG CAACAGACCA
  AAACCATTAC TGAAAACCAC AAGCAACTGA AATGCAGAAT TGTGGAGCCA AGTCCCAATG
  GATACATCTA TAGCACAAGT CCTGCACCTC AGGTTCAACC AACATTGCTG AAGAGGGACA
  R
  ACAGATTACT AAGAGCCAGA GGATCAGAGA GCAGAGAACT TATTCTGATG CCATGTCTCC
  TAGTAAATAT GTCCTAGAAA TATGTCCCTA AAGTCTCTCC GACATGACTG CCTATACAGG
  ATCTGAACAA GGACCACAAT AGACATGCTA AAGCAGATGA GGACGAGACC ACTGGGTCTC
  AGCCCTACAC AAAGAACCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135359163	ENSMUSSNP3446720	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107959988					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78500910 () rs orientation: forward

Symbol	Name	Function Class
Gm65533	predicted gene, 65533	within coordinates
Rr578423	regulatory region 578423	914 bp proximal
Rr578424	regulatory region 578424	1333 bp proximal
Tssr33603	transcription start site region 33603	736 bp downstream
Tssr33604	transcription start site region 33604	806 bp downstream
Tssr33605	transcription start site region 33605	819 bp downstream
Tssr33606	transcription start site region 33606	834 bp downstream
Tssr33607	transcription start site region 33607	910 bp downstream
Tssr33608	transcription start site region 33608	968 bp downstream