rs107955041 SNP Detail

Summary

• ID
  rs107955041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153564664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGACACAC ACCTGTCCTT
  AGTGGCTTCT CTGAACCATA AAGGAAGAGT CTATAACTCC TTTCTTGCAT TTTAGGTTCT
  AAAGCCAGAA CCACGTGGCT GAGGCTGCCA ACTTCTGCTG CTTTGCGGAG CTGCAAGTTG
  GGCCCTCCTT TTTAGTGACA TCCATTAACG ATAGTTTCTT TTACCACTTA AACTTTTCCT
  Y
  GATCCCTTTC ACACGTTGGG AATGAGGTTG TATGGGGCCT TGCCCTGAGG TCACCACATT
  CTTTATCCCA TTTAGCATTA GGCTTTTCTT TAAACTGTTT TATTTCCCTG AGCACTGGAT
  TTAGCTGCAC TACACTTCCT GGAGCTTCTT TTCTCTTCAG ACTATGCATA TTCTAGTTCT
  CTTTATCTAG CTTGCTCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148002137	ENSMUSSNP766900	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320564600	CHEV_2_153548480	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs107955041					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153564664 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Intron
Rr567732	regulatory region 567732	408 bp proximal
Rr567733	regulatory region 567733	1645 bp proximal