rs107954517 SNP Detail

Summary

• ID
  rs107954517
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57378906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACCGTTAA AGCGGCTATT TCAGTGCAGA GGTGCAGCTC
  ACTCTTTCTT TCTCAAAGCC ACGGAGACTG CAGAGGCAGA CTGCCTGGGA AGAGGGGGGG
  G
  GGGGGGGGAT CTGGTGTCAA TCTCTTTTGT TGAAAGCCTG TACCAATCGA TTCTAGAAAT
  TCACTGCCAC ATTTCCTGGA GTGTCTCTTT GAAACACCT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss135201519	ENSMUSSNP4482515	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs107954517					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57378906 () rs orientation: forward

Symbol	Name	Function Class
Rr1931	regulatory region 1931	within coordinates
Rr375020	regulatory region 375020	within coordinates
Rr577104	regulatory region 577104	within coordinates
Rr577105	regulatory region 577105	1255 bp distal
Rr577106	regulatory region 577106	1084 bp distal
Rr577107	regulatory region 577107	838 bp proximal
Wwtr1	WW domain containing transcription regulator 1	Intron