rs107948193 SNP Detail

Summary

• ID
  rs107948193
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4900915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AGACAGGGTT TCTCTGTATA GCCCTGGCTG TCCTGGAACT
  CACTTTGTAG ACCAGGCTGG CCTTGAACTC AGAAATCCGC CTGCCTCTGC CTCCCGAGTG
  C
  TGGGATTAAA GGCGTGCGCC ACCACGCCTG GCTCATTTCC CTTTTTTTAT TGCTAACTTT
  TTGTGGCTTA GTTGAATTAA GCTTGGTGGT TAGGTATGTG C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss132934022	ENSMUSSNP2609874	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs107948193					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4900915 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17128	CpG island 17128	1820 bp proximal
Rr626066	regulatory region 626066	1569 bp proximal
Tssr54840	transcription start site region 54840	1998 bp upstream