rs107947457 SNP Detail

Summary

• ID
  rs107947457
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135001688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ACACACACCA GGGTTTGGGT TTTGGTCTGC CTGTTTTTTT
  TCTCCACCTC CCAAGTACTA GGGTCAAAGG TGTCCACCAC TGCAACCAAC AATCACCGTA
  W
  TTTTTTTTTT TTTTTTTTTT TGAGCCAGGG TTTCTCTATA TACCCCTGGC TATCCTGGAA
  CTCAATCGGT AGACCAGGCT GGACTGGAAC TCAGAAATCC A                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147543335	ENSMUSSNP449895	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107947457					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135001688 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	1617 bp upstream
Cpgi15068	CpG island 15068	754 bp distal
Rr398589	regulatory region 398589	1186 bp downstream
Rr601975	regulatory region 601975	1574 bp distal
Rr601978	regulatory region 601978	1907 bp distal
Rr601979	regulatory region 601979	1564 bp distal
Rr601980	regulatory region 601980	1073 bp distal
Rr601981	regulatory region 601981	1248 bp distal
Rr601982	regulatory region 601982	167 bp proximal
Tssr43973	transcription start site region 43973	1660 bp upstream
Tssr43974	transcription start site region 43974	1630 bp upstream
Tssr43975	transcription start site region 43975	1604 bp upstream
Tssr43976	transcription start site region 43976	1585 bp upstream
Tssr43977	transcription start site region 43977	1558 bp upstream