rs107947082 SNP Detail

Summary

• ID
  rs107947082
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153564684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGCTTCT CTGAACCATA
  AAGGAAGAGT CTATAACTCC TTTCTTGCAT TTTAGGTTCT AAAGCCAGAA CCACGTGGCT
  GAGGCTGCCA ACTTCTGCTG CTTTGCGGAG CTGCAAGTTG GGCCCTCCTT TTTAGTGACA
  TCCATTAACG ATAGTTTCTT TTACCACTTA AACTTTTCCT TGATCCCTTT CACACGTTGG
  R
  AATGAGGTTG TATGGGGCCT TGCCCTGAGG TCACCACATT CTTTATCCCA TTTAGCATTA
  GGCTTTTCTT TAAACTGTTT TATTTCCCTG AGCACTGGAT TTAGCTGCAC TACACTTCCT
  GGAGCTTCTT TTCTCTTCAG ACTATGCATA TTCTAGTTCT CTTTATCTAG CTTGCTCCTT
  TTCATTATAG ATCTGCATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148002145	ENSMUSSNP6099131	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320564602	CHEV_2_153548500	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs107947082					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153564684 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Intron
Rr567732	regulatory region 567732	388 bp proximal
Rr567733	regulatory region 567733	1625 bp proximal