rs107936876 SNP Detail

Summary

• ID
  rs107936876
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150272127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAA TCACTGTCAT GAGAGAGAGA
  S
  AGACAGACAG CGAAACAGAG AGAGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148049642	ENSMUSSNP1044323	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321428599	CHEV_4_149561779	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs107936876					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150272127 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car6	carbonic anhydrase 6			Intron
				Noncoding-Transcript-Variant
Rr605217	regulatory region 605217			1136 bp distal
Rr605218	regulatory region 605218			929 bp distal
Tssr40380	transcription start site region 40380			251 bp downstream
Tssr40381	transcription start site region 40381			229 bp downstream
Tssr40382	transcription start site region 40382			220 bp downstream
Tssr40383	transcription start site region 40383			202 bp downstream
Tssr40384	transcription start site region 40384			1473 bp upstream
Tssr40385	transcription start site region 40385			1528 bp upstream
Tssr44720	transcription start site region 44720			273 bp upstream
Tssr44721	transcription start site region 44721			1481 bp downstream
Tssr44722	transcription start site region 44722			1515 bp downstream
Tssr44723	transcription start site region 44723			1565 bp downstream