rs107930934 SNP Detail

Summary

• ID
  rs107930934
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153397513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTGCTTT TGGCACAGAC
  ATGTTTTTTA TCTTGAGCAA CCCTACAGAG TCACTTGCTT CTCTCTTATC TGTCTTACAA
  GGCAGCAGCC ATCAGCAGGC CAACCTCAGC TGAGCTCAGC TGTCGCAGCA CAAGGTCAGT
  TTCTACCTCC AATTACAATG GGGAAGCCTT GATATACATC AGGATACAAT TAACCCAGAA
  W
  GGGGTTACAT CCCAGAAACA CGATCCCAAC TGGTGGACCT CAGAGGAGCT TCAAACGGTC
  TGTGAAACCC CACAAACTTG ACAACACAGA GCTAGGATCC CACCTGGTTG GCCTCAGTGG
  GGCTTCAAAG GGCCCGCAAA TCCCTACAAG CGCCACATAA AACTATGTCA TATAAGTTGT
  GCATTATGCT GGCCACTGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136111023	ENSMUSSNP1698497	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107930934					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153397513 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587732	regulatory region 587732			1045 bp distal
Rr587733	regulatory region 587733			within coordinates
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant