rs107919515 SNP Detail

Summary

• ID
  rs107919515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:106698786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCTCAGGG TTCTTTTGAT TTGCATTTCT CTGATGATTA
  AGAATGTTGA ATATTTTTTC AAGTGCTTCT CAGCCCTTCC ATATTCCTCA GTCAAAAATT
  Y
  TTTGTTTAGT TCTGTAACCC ATTTTTAATG GGGTTATTTG AATTTCTAGA GTTCAGCTTA
  GTGAGCTCTT TGTATATAAT GGATATTAGT CCCATATCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135580381	ENSMUSSNP833906	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107919515					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106698786 () rs orientation: forward

Symbol	Name	Function Class
Cd53	CD53 antigen	1321 bp upstream
Rr397926	regulatory region 397926	1373 bp downstream
Rr582868	regulatory region 582868	1332 bp distal
Rr582869	regulatory region 582869	1016 bp distal
Tssr31146	transcription start site region 31146	1294 bp downstream
Tssr35001	transcription start site region 35001	1442 bp upstream
Tssr35002	transcription start site region 35002	1425 bp upstream
Tssr35003	transcription start site region 35003	1398 bp upstream
Tssr35004	transcription start site region 35004	1386 bp upstream
Tssr35005	transcription start site region 35005	1330 bp upstream
Tssr35006	transcription start site region 35006	1316 bp upstream
Tssr35007	transcription start site region 35007	1284 bp upstream