rs107916949 SNP Detail

Summary

• ID
  rs107916949
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115889373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGGTCAG GGATGTACGG
  CATGGGCAGT GTCCCCAGTT GCAGTCACTC TTGGCTCTGC CATTGCTTTT GGATGGTGCA
  TCCATTCTTT CCATATCTGC CTGTGAAGCC CTTCCCAGGG GCCATAGCAT ATTAGCATTG
  GACAGAGCAG AATGAACTGG CACAGAGCCT GCCCTTGAGG GTACCGGAGG CCTCACAGCC
  R
  TCCTCCCCAC CTCTCCAGGT TGATAGACAT TGCTCGGAAG CTGGACAAGG CTGAACGGGA
  GCCCCTGCTC ATGTGTGCTT GCTACTTTAA GAAGCTGGAC AGTCCTGGCT ATGCTGCTGA
  GACCTACCTG AAGATCGGGG ACCTGAAGTC TCTGGTGCAG CTGTATGTGG ACACCAAGCG
  CTGGGATGAG GTGAGAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133573862	ENSMUSSNP2007957	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107916949					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115889373 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ift122	intraflagellar transport 122			Intron
				Noncoding-Transcript-Variant
Rr637096	regulatory region 637096			323 bp distal
Rr637097	regulatory region 637097			1937 bp proximal