rs107915330 SNP Detail

Summary

• ID
  rs107915330
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116648691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GGGTTAAATT GCAGCCCAGA GGCAGGGTCC CACCCACACA
  CCTGCAGGAC AGATTGCTGG TTTCTGCTGT TGCCCTCCAG TGTTCTTTCC CGTAAGCTGA
  G
  GTAATAAAGT AATTTCCAAC CCTCCCTCTC CCCCTCATAC AATATACTCA TATTTCCTGT
  CCCCGCATCC CCTCCACTCC AATCCAGGCT CACTCCCTAC C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133577970	ENSMUSSNP2199215	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107915330					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116648691 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17886	CpG island 17886	1729 bp proximal
Gm67954	predicted gene, 67954	924 bp upstream
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	Intron
Rr637230	regulatory region 637230	within coordinates
Rr637231	regulatory region 637231	1449 bp distal
Rr637232	regulatory region 637232	470 bp distal
Rr637233	regulatory region 637233	523 bp proximal
Rr637234	regulatory region 637234	935 bp proximal
Rr637235	regulatory region 637235	1424 bp proximal
Tssr58385	transcription start site region 58385	179 bp downstream
Tssr58386	transcription start site region 58386	64 bp upstream
Tssr62606	transcription start site region 62606	300 bp upstream
Tssr62607	transcription start site region 62607	709 bp downstream