rs107906247 SNP Detail

Summary

• ID
  rs107906247
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148223579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACCACAT TGCAGGGATG
  ACCTTTAATG CAACATTTCC TATAGAAACA GGACAAGACA ACTCTTACAT CCTTGGAGGG
  CAGAGTCTAA ATCAGTGGTT CTCAACCTTC CTAATGCTGC AACCCTTCCA CACAGTTCCT
  CATGTGGTGA CTCCCAATCA TAAAATTATT TTCATTGCTA CTTCATAACT GCAATTTCAC
  R
  ACAGTCAGGA ATTGTAAATA TCTGATATGC AGAATATCTG ATATGCCACC CCTGGGAAAG
  AGTCATTTGA CCCCAAAGGG GTTGAAGCCC ACACATTGAA CCACTTCTTT AAATTCTCTT
  GGCTTCTAGG CCTGCCATGT CACCCCTAAC TCCAGACCAT TTCTCTAACC TCAGATTTTC
  TTTCAGTTAA ACAGAAGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss147994265	ENSMUSSNP3749426	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs107906247					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148223579 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15292	CpG island 15292			744 bp proximal
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr398855	regulatory region 398855			1162 bp upstream
Rr604600	regulatory region 604600			515 bp proximal
Rr604601	regulatory region 604601			570 bp proximal
Rr604602	regulatory region 604602			870 bp proximal
Rr604603	regulatory region 604603			1083 bp proximal
Rr604604	regulatory region 604604			1131 bp proximal
Tssr40254	transcription start site region 40254			1358 bp upstream
Tssr40255	transcription start site region 40255			1389 bp upstream
Tssr40256	transcription start site region 40256			1560 bp upstream
Tssr40257	transcription start site region 40257			1577 bp upstream
Tssr40258	transcription start site region 40258			1649 bp upstream
Tssr40259	transcription start site region 40259			1661 bp upstream
Tssr40260	transcription start site region 40260			1673 bp upstream
Tssr40261	transcription start site region 40261			1856 bp upstream