rs107899463 SNP Detail

Summary

• ID
  rs107899463
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153565127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCTGTCA AAGACCTTCA
  TCCAGAAACT CTTCAATTTA GCCTCTGGCA GATTTTTAGG ACAAGAGCAG AAAGCAGCCA
  CATTCTTTGT CAAAACAGCA CAAGAATGGT CTCTAGACTA GTTGTTAATA TTCTCCCCTT
  CTGAAACTTC TTGAGCTAGG CCCACATTGC TCTCAGCATT GCTGTCCATA CTCCTACTAG
  S
  GTGCCCCAAT TTTAAACTTT TGCATTTAGG TGCTTATCTA CTCAAAGTTC AAAAGTGCAC
  ATTCTATCAA CAAGCAGCAT GGTCAGGCCT GTCACAGTGA TACCCAACTC CTGATACCAA
  CTTCTGCCCC AGTCACTGTT CTATTGCTGT AAACATACAT CATCTCTGTT CCTGTATCCT
  AGGAAAGCCT TGTCACCCGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148002172	ENSMUSSNP4928687	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss320564607	CHEV_2_153548943	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs107899463					SNP	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153565127 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Intron
Rr567732	regulatory region 567732	within coordinates
Rr567733	regulatory region 567733	1182 bp proximal