rs107893409 SNP Detail

Summary

• ID
  rs107893409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151766475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTGTTTCC TGGTTTTACC AGGCCATTTC CCTGCCTTCC
  TCCCTCCTCC CAACTCTCGA GTCCTACAGA CAGGACAACT AGCAAGATGT TCCACTATCT
  Y
  TACTGGACGA TTCTTTTCAT TATACCTGAG ACAGTCTGCT TAATGTTCTG ACATGGGGGA
  GGGGCATATA TTTTTAATTT AGATCCTTCC AGAAGGTAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145723829	ENSMUSSNP1776914	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107893409					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151766475 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700025G04Rik	RIKEN cDNA 1700025G04 gene			Intron
				mRNA-UTR
D1Mit513	DNA Segment, Chr 1, Massachusetts Institute of Technology 513			1102 bp proximal
Rr420379	regulatory region 420379			within coordinates
Rr420380	regulatory region 420380			439 bp proximal