rs107879840 SNP Detail

Summary

• ID
  rs107879840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137496326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT CCGCACTTTC CCCTCAGCTC
  Y
  CCTGCCAGCT TTCCTCACCC CAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147619294	ENSMUSSNP4833986	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321367279	CHEV_4_137324930	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs107879840					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137496326 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Rr602710	regulatory region 602710			within coordinates
Rr602711	regulatory region 602711			618 bp proximal
Rr602712	regulatory region 602712			1889 bp proximal
Tssr44137	transcription start site region 44137			648 bp downstream
Tssr44138	transcription start site region 44138			679 bp downstream
Tssr44139	transcription start site region 44139			933 bp downstream
Tssr44140	transcription start site region 44140			947 bp downstream
Tssr44141	transcription start site region 44141			964 bp downstream
Tssr44142	transcription start site region 44142			973 bp downstream
Tssr44143	transcription start site region 44143			989 bp downstream
Tssr44144	transcription start site region 44144			1015 bp downstream
Tssr44145	transcription start site region 44145			1040 bp downstream