rs107873430 SNP Detail

Summary

• ID
  rs107873430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:18620238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACCTGCT TTTCAGTGTC
  ACAGGCCGGG GTGTCATACC TGGGCCTGTT TGAACCCTAT GACTTCTAAG GCTGCGCTAA
  GAGCCAGTTG CCTGCAGAAT CGACTGGAAA TGCCAGTGCC CATAAGACTG CTCTCTCTGC
  CAAGCACCTG AGGGTCAGAA GCCATCCCAC CTGAGAGGGT TTTTGTTTCT GTTTGTTTTT
  Y
  GGTTTTTCGA GACAGGGTTT CTCTGTATAG CCCTGGCTGT CCTGGAACTC ACTCTGTAGA
  CCAGGCTGGC CTCGAACTCA GAAATCCGCC TGCCTCTGCC TCCCGAGTGC TGGGATTAAA
  GGCGTGCACC ACCATCGCCG GCCCCACCTG AGAGTTTAAT CATTCTAAGG CTCCAGCATC
  AAAGCCCCTC CCCTAGATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148463527	ENSMUSSNP4621640	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107873430					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18620238 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pglyrp1	peptidoglycan recognition protein 1			Intron
				Noncoding-Transcript-Variant
Rr642924	regulatory region 642924			1623 bp distal
Tssr64752	transcription start site region 64752			1604 bp downstream