rs107861784 SNP Detail

Summary

• ID
  rs107861784
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127675766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTTCCAG CTTCTGGCTA TTATAAATAA GGCTGCTATG
  AACATAGTGG AGCGTGTGTC CTTATTTCAT GTTGGAGCAT CTTTGGGTAT ATGCCCAGGA
  S
  TAGGATAGCT GGGTCCTCAG GTAATAGCTG GGTACATAAT GGCAGCATTC GTTAATAATG
  CCCTCAAGTC AGTCCTGTAG TGTGTAGCTC AGTTATCTG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147542440	ENSMUSSNP4727370	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs107861784					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127675766 () rs orientation: forward

Symbol	Name	Function Class
Bub1	BUB1, mitotic checkpoint serine/threonine kinase	1981 bp upstream
Cpgi12232	CpG island 12232	1770 bp distal
Rr397289	regulatory region 397289	1770 bp downstream
Rr564601	regulatory region 564601	1998 bp distal
Rr564602	regulatory region 564602	1491 bp distal
Rr564603	regulatory region 564603	855 bp distal
Tssr26147	transcription start site region 26147	1971 bp upstream