rs107861597 SNP Detail

Summary

• ID
  rs107861597
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:89227647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTATATTG TACAAAAATT TTAATGGTGA TTTTGTTTCT
  GTATAAAAAG TTTGACTCTT ACCTAAAATC AAAAAATGCA TAATTAAGAA AAACCAACAA
  T
  GTTTTGAAGA TGCACTCCCC ATTGCAGCTA TTTGTGTATG TTGTACACTG TGCAAACATT
  TGCTTCTACA TTTTAAGTTA GTAATAAAAC AGGTTTTGG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146947745	ENSMUSSNP6568105	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs107861597					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89227647 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2b	cyclin dependent kinase inhibitor 2B	Intron
Cpgi14441	CpG island 14441	1009 bp proximal
Gm12610	predicted gene 12610	within coordinates
Rr376809	regulatory region 376809	313 bp downstream
Rr398336	regulatory region 398336	1543 bp upstream
Rr595183	regulatory region 595183	1216 bp proximal
Rr595184	regulatory region 595184	1619 bp proximal
Rr595185	regulatory region 595185	1764 bp proximal
Rr595186	regulatory region 595186	1834 bp proximal
Tssr42412	transcription start site region 42412	1549 bp downstream
Tssr42413	transcription start site region 42413	1611 bp downstream