rs107860631 SNP Detail

Summary

• ID
  rs107860631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126342053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAACCTGCTA CCACAGCCAG GCTGAACAAA AGGGGACTCC
  CAAGAGAGTG TTCCCGGAGG ATGGCTTCTT CTGTGGAAAT CAAGGTAGAG GTGATCAACA
  Y
  AAGAAAAGCC AGCTGGCTAC AGCACCTACT TGCCAACCTT CTAGCTGTCC TGGACTGAGA
  AGGATAAGCA AGCATCTTTG GAGATGCCAC CTGTTTTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147505129	ENSMUSSNP3780797	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107860631					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126342053 () rs orientation: forward

Symbol	Name	Function Class
Atp8b4	ATPase, class I, type 8B, member 4	Intron
Rr564346	regulatory region 564346	857 bp distal
Rr564347	regulatory region 564347	297 bp distal
Rr564348	regulatory region 564348	within coordinates
Rr564349	regulatory region 564349	464 bp proximal
Tssr632	transcription start site region 632	104 bp downstream
Tssr19934	transcription start site region 19934	1057 bp downstream
Tssr19935	transcription start site region 19935	137 bp downstream
Tssr26038	transcription start site region 26038	1959 bp upstream
Tssr26039	transcription start site region 26039	421 bp upstream
Tssr26040	transcription start site region 26040	408 bp upstream
Tssr26041	transcription start site region 26041	391 bp upstream
Tssr26042	transcription start site region 26042	339 bp upstream
Tssr26043	transcription start site region 26043	275 bp upstream
Tssr26044	transcription start site region 26044	201 bp upstream
Tssr26045	transcription start site region 26045	159 bp downstream
Tssr26046	transcription start site region 26046	498 bp downstream