rs107856042 SNP Detail

Summary

• ID
  rs107856042
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115015105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCCTCTAG CCGGCGGAGG
  AGCACATTAC ATGTCTATCC TGTGACAACC TGCTATAGAG CCTAGCAAAT CCTTTGTAGC
  ACTAAAACTA CGAATGGTTA TTAAACCATT TAATTAATTA AATCATCCTT ATATTGATTT
  TCTTTTTGCT TTTTGTTTTT TTTTTTGAGA TAGGGTTTCT CTGTGTATCC CTGTCTGTCC
  T
  GGACTAACTC TGTAGACCAG GCTGGCCTCA AAGCATTCAG ACAGGGTTTC ACTGTGCAAC
  AGCCCTGGAA TTTGCTATAT AGACAAAGCT GGCCTCGAAC TCACAGCCAT CCACCTGCCT
  CTGTCTCCAA AGGGCTAAGA TGAAAGCATG AACTACCTCA TTCACAACCT TGTGGAGCTA
  TCACCTCTAG TGCCAAGTTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss133572127	ENSMUSSNP5135759	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs107856042					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115015105 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17868	CpG island 17868	99 bp distal
Gm68165	predicted gene, 68165	934 bp downstream
Rr399845	regulatory region 399845	44 bp downstream
Rr636913	regulatory region 636913	within coordinates
Tamm41	TAM41 mitochondrial translocator assembly and maintenance homolog	268 bp upstream
Tssr62499	transcription start site region 62499	263 bp upstream
Tssr62500	transcription start site region 62500	1046 bp downstream