rs107854744 SNP Detail

Summary

• ID
  rs107854744
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:142844159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGCAAA GTAAGTACCT
  CAAGAAGAGG TGGTGGCATC GGGCGTGGTG GCGCACGCTT TTAATCCCAG CACTTGGGAG
  GCAGAAGCAG GCGTATTTCT GAATTCGAGG CCAGCCTGGT CTACAAAGTG AGCTCCAGGA
  CAGCCAGGGC TATACAGAGA AACCCTGTCT CAAAAAAAAA AAAAAAAAAA AAAAAGAAGT
  K
  GTAGCATGAC AGCGTTTGTG ACCTGAACAC TGGGGGTCGG GGGAGGGTGC TATTTTGGGT
  CCTTTGCAGG AGTTCTTTGA ATCACCTCCC CTGTGAGGCA GGGCGCCATG ATCCTGTCTT
  ATTGGAGGGG AAAGAAGAGG TTCAAAGGAG TGGAGGCACC AGCTAGCAAA GTTCACAGGG
  AAGCAGTCAC GATACGAATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147773209	ENSMUSSNP4600680	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107854744					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142844159 () rs orientation: forward

Symbol	Name	Function Class
Prdm2	PR domain containing 2, with ZNF domain	Intron
Rr604158	regulatory region 604158	1178 bp proximal