rs107853461 SNP Detail

Summary

• ID
  rs107853461
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138611181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ATTCAGGTAT GGCTGCATTA AGTGGACCTA ACAGATGGAA
  GGTCCAGGTG TCTGTTCAGG TGCCCATCCA GGTGTCCATC CAGGTGTCTG TGCAGGTGTC
  T
  GTGCAGGTGC TCATCCAGGT GTCCTTGCAG GTGTCTGTGC AGGTGCCCAT CCAGGTGTCC
  ATGCAGGTGC CCATCCAGGT GTCCATGCAA GTGTCTGTGC A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147659828	ENSMUSSNP2663023	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs107853461					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138611181 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15156	CpG island 15156	1390 bp distal
Pla2g2e	phospholipase A2, group IIE	1056 bp downstream
Rr603039	regulatory region 603039	298 bp proximal
Rr603040	regulatory region 603040	612 bp proximal