rs107818568 SNP Detail

Summary

• ID
  rs107818568
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150652637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAATCTGT GAACGCATAG
  ATTCTGAATT CATTGGCCTG CTCTATCACA TTATCCAGAT GTTCCAGAGT CCGCCTTCTT
  CTCTCTTTTC TGGTGAATAC ATTGTATGTT GCTGGGCACT AACCCTACAT TTGATGCCAC
  AGTCTGGCAC TCCACCCTCC AAACTATCTC CTACCAACCA TCTCCCCTTC TCAAAGCTCC
  Y
  TCTAACCCTA CAAACACTGC TCCTCCCATT GGTAACCTGC CTTGGTGAGA AGATGTTCTG
  GCCTCCCTTG GTGCACAGTT GCGATGCCCC TTGCTGCTTT CAGGTAGTAC CCTGGAGTGC
  TCTGTGATGA CTGTATGCAC TTACTTTACC TGCAAAAAGC TAGTCACAGT TTAAGCATAT
  CCTGTCAAGG TTTTTCAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148055000	ENSMUSSNP2728338	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107818568					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150652637 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15352	CpG island 15352	874 bp proximal
Gm13091	predicted gene 13091	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr398883	regulatory region 398883	1698 bp downstream
Rr605335	regulatory region 605335	1545 bp distal
Rr605336	regulatory region 605336	14 bp proximal
Rr605337	regulatory region 605337	354 bp proximal
Tssr40415	transcription start site region 40415	1686 bp downstream
Tssr40416	transcription start site region 40416	1596 bp downstream
Tssr40417	transcription start site region 40417	636 bp upstream
Tssr40418	transcription start site region 40418	1037 bp upstream
Tssr40419	transcription start site region 40419	1069 bp upstream
Tssr40420	transcription start site region 40420	1304 bp upstream
Tssr40421	transcription start site region 40421	1358 bp upstream
Tssr44743	transcription start site region 44743	1304 bp upstream
Tssr44744	transcription start site region 44744	520 bp downstream
Tssr44745	transcription start site region 44745	1685 bp downstream
Tssr44746	transcription start site region 44746	1886 bp downstream
Tssr44747	transcription start site region 44747	1896 bp downstream
Tssr44748	transcription start site region 44748	1934 bp downstream