rs107804041 SNP Detail

Summary

• ID
  rs107804041
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:70318832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTGCTAG ACAGCTGCTA
  ACCAGCCAGC CTAGCTGGAA ACGCAAGCTT CTGGTTCACT GAGCGATCCT GTCTCAAGGG
  AATAAGGCAG TCAGTGACAG GGGAAAACGC TTGCCATCTT TCTCTGGCCA TTACATATAC
  CTACACAGAC ATACACACCT GCACATTCAT ATGCATACAC ACATGCACAT ACCACACACT
  K
  AAAAAATTAA TTAAGATAAA TCTTAAAAGA ATATTCATCT TCCGACAGGT GGTTGTGGCT
  CACACCTTTA ATCCCAGCAC GTAGGAGGCA AAAGCAGGCC GATCTCCAGA GTTTGACGCC
  AGCCTAATCA ACACAGCTTG TTCCAGGCAG CAAGGGCTAC ACAGAGAAAC CTTGTCTCAA
  AACAAACAAA ACTATCCATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146495747	ENSMUSSNP7070511	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107804041					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:70318832 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdk5rap2	CDK5 regulatory subunit associated protein 2			Intron
				Noncoding-Transcript-Variant
Rr593869	regulatory region 593869			1201 bp distal
Rr593870	regulatory region 593870			1282 bp proximal
Rr593871	regulatory region 593871			1707 bp proximal