rs107798820 SNP Detail

Summary

• ID
  rs107798820
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:121069419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AGTTCGAGGC CAGCCTGGTC TACAGAGTGA GTTCCAGGAC
  AGCCAGGGCT ATACAGAGAA ACCCTGTCTC CAAAAACCAA AAACCAAAAA AAAAAAAAAA
  C
  AAAAAAAAAA AAACCAAAAC AAAAACAAAC AAACACCCCG TACCTGTGCC TGCCAAGCCA
  GAGGCCACCA GGCTGAAGAC AGACTGCCAA ATCTACCACG T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137064593	ENSMUSSNP5279024	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107798820					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121069419 () rs orientation: forward

Symbol	Name	Function Class
Gm56090	predicted gene, 56090	1989 bp upstream
Rr688903	regulatory region 688903	1899 bp distal
Rr688904	regulatory region 688904	within coordinates
Rr688905	regulatory region 688905	115 bp proximal
Rr688906	regulatory region 688906	1538 bp proximal
Ulk4	unc-51-like kinase 4	Intron