rs107790877 SNP Detail

Summary

• ID
  rs107790877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153565452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCCAGTC ACTGTTCTAT
  TGCTGTAAAC ATACATCATC TCTGTTCCTG TATCCTAGGA AAGCCTTGTC ACCCGACAGG
  TCTGACCTGG GCTGAGTGAC ACCTCTGAGT CTTGGTGTTT CCAGCAGCAG CTCCCCCTTT
  CTTCCTGCAG TGTAACCCAG TGATGATCGA TGCCATCAAG GTGTCTGCTG CTCACAGGGC
  Y
  CGGTACTTCT GGGGTAACCT ACCCGGAATG AACAGGTAAG AGTCCTGAGG GGGACAGGGA
  ACAGAGAGCA GAGTTATATC TAGGTCTTCA TTGACATTCT AGCCTTCTAG AAAGTCCTGA
  CTTTGGGCTG CTCTGGATAA TTGGAGCACT GGGCAGGACT CCTCAGGCAG CTGCAGTGCT
  CCAGCTTCAG GGCAGGCGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148002185	ENSMUSSNP6753129	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107790877					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153565452 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Coding-Synonymous
Rr567732	regulatory region 567732	74 bp distal
Rr567733	regulatory region 567733	857 bp proximal