rs107790827 SNP Detail

Summary

• ID
  rs107790827
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:146823709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AGCTAGGTAA CCATTACTTG ACTAAACCAA AACTTTTGAG
  GGAGCCGTTA TTGTTTCAAA GCTCTGGGTA TGTGCTGGCA GAGTGATTTT ATGCATAGAC
  A
  AATGTAAATG TGATTCCAAA ATTTGTCTGG TAAAATCAGA CATTGTCTTT AAATAGGCCT
  TGAAGGGTTG AGGGATGTGA TCATGGGGCA CACAGGGAAT C                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147752306	ENSMUSSNP1560419	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs107790827					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:146823709 () rs orientation: forward

Symbol	Name	Function Class
Rr604449	regulatory region 604449	1375 bp distal
Rr604450	regulatory region 604450	1586 bp proximal
Rr604451	regulatory region 604451	1809 bp proximal