rs107781007 SNP Detail

Summary

• ID
  rs107781007
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117117337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCCGGGTT TGTTTTTCTT
  TTTTCTCAGC CCCAGGCAGC CTCTAGGCTC ACAAACAACC AGCAATTTCT GAGTACTTTA
  TATGACTTAC AGGTCTTGAA ATTTCATCTT TCTTTCACCA GGCACCTGTA ATTGGAGTTC
  CAGGGAATCC AGCGCCCCCT TCTGGCCTCT GAGCACCAGA CACACACACG GTGCACAAAC
  R
  TAAAATAGAA ATAAGCAAGT GAAAGCACAG AGCTGAGAGG TCCGAGCTCA CCTGCCTTGT
  GGGTTGTCTG TGCCTTTGCT GCCACGGCCC CAAAATTGTT GCCTAGTTAT GGAGATGTGC
  TCCTCTCTAA AAAAATATTT TATTCTATGC GTTTTGCCTA CATGCTTGTC TGTGCACCAC
  TTGTGTTCCT GGCACCCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147286869	ENSMUSSNP5551315	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107781007					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117117337 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598098	regulatory region 598098			31 bp distal
Rr598099	regulatory region 598099			1281 bp proximal
Tmem53	transmembrane protein 53			Intron
				Noncoding-Transcript-Variant