rs107780218 SNP Detail

Summary

• ID
  rs107780218
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147899101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAG ACAGATTTCT GTTCAGCTCC
  T
  CAGAGGCTAA GGCAGAAAGC TGTAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147983224	ENSMUSSNP703061	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs107780218					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147899101 () rs orientation: forward

Symbol	Name	Function Class
Rr367778	regulatory region 367778	1137 bp downstream
Rr398848	regulatory region 398848	within coordinates
Rr604504	regulatory region 604504	within coordinates
Rr604505	regulatory region 604505	106 bp proximal
Tssr44549	transcription start site region 44549	27 bp downstream