rs107780083 SNP Detail

Summary

• ID
  rs107780083
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:105735475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGAGGATT CTATGGCAGC TTCTCTCTCA CTACCATGGG
  AAGAAAACAG ATAAAATTAA ATTAACCCTC GGGACTCCAT GCTCTCGGGG GGGGGGGGGG
  K
  TTCTTGGGAC CTTGCAAAAA GGATGGAGCA TATGGTAGGA AGTACCCCTG TGACAACATG
  GGCTCAAATG AAATTTCAAG GATCATAAAT CCTCCTGTT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146766026	ENSMUSSNP4184891	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss324800371	CHEV_14_105897258	CHEVERUD	SCREENING_POP	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs107780083					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:105735475 () rs orientation: forward

Symbol	Name	Function Class
4930449E01Rik	RIKEN cDNA 4930449E01 gene	747 bp upstream
Gm62338	predicted gene, 62338	within coordinates
Rr497222	regulatory region 497222	196 bp proximal
Rr497223	regulatory region 497223	755 bp proximal
Rr497224	regulatory region 497224	1167 bp proximal
Rr497225	regulatory region 497225	1501 bp proximal
Rr497226	regulatory region 497226	1810 bp proximal
Tssr127089	transcription start site region 127089	1777 bp upstream
Tssr127090	transcription start site region 127090	1958 bp upstream