rs107769880 SNP Detail

Summary

• ID
  rs107769880
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:22034520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CGCCCCTTGG CACCGGAGCC TCCTCCCTGG CTTCCCCGCG
  GGCGGCGCCT TCCGCCCTCC GCCATTGTGT CCATCCCCTG CCCGCAGAGC GCCGCTTGCC
  C
  GGGCCGCTGT AGTCAGTTAC CTGCTCCGCC GGGCGAACAC GTGCGGGGGC AGACAGACAC
  TCCAGCTTCG CAGGAGGCCG GCGCCCCTGC ACCGCAGGTA A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146960190	ENSMUSSNP3518224	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs107769880					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22034520 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	within coordinates
Cpgi1374	CpG island 1374	566 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	within coordinates
Raet1e	retinoic acid early transcript 1E	mRNA-UTR
Rr384270	regulatory region 384270	712 bp upstream
Rr428833	regulatory region 428833	25 bp distal
Rr428834	regulatory region 428834	within coordinates
Tssr92677	transcription start site region 92677	216 bp downstream
Tssr92678	transcription start site region 92678	140 bp downstream
Tssr92679	transcription start site region 92679	84 bp downstream
Tssr92680	transcription start site region 92680	37 bp downstream