rs107764254 SNP Detail

Summary

• ID
  rs107764254
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78501075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCAGGTT CAACCAACAT
  TGCTGAAGAG GGACAGACAG ATTACTAAGA GCCAGAGGAT CAGAGAGCAG AGAACTTATT
  CTGATGCCAT GTCTCCTAGT AAATATGTCC TAGAAATATG TCCCTAAAGT CTCTCCGACA
  TGACTGCCTA TACAGGATCT GAACAAGGAC CACAATAGAC ATGCTAAAGC AGATGAGGAC
  R
  AGACCACTGG GTCTCAGCCC TACACAAAGA ACCACAGGCC ACTAAAGAAT GCTGAAAAGC
  AGGAGAGACA GTCTTCCCCA GGGAGGAGCA CACCAATTAG CTACTCAACA CCAAATGGTC
  AGGCCTGAGA ACATACACAC AAGTAACATT ATACAGACGG TACGGGGTGT GTTCATGTAT
  TTGGGAATTT ACATATACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135359166	ENSMUSSNP1578165	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107764254					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78501075 () rs orientation: forward

Symbol	Name	Function Class
Gm65533	predicted gene, 65533	within coordinates
Rr578423	regulatory region 578423	749 bp proximal
Rr578424	regulatory region 578424	1168 bp proximal
Tssr33603	transcription start site region 33603	571 bp downstream
Tssr33604	transcription start site region 33604	641 bp downstream
Tssr33605	transcription start site region 33605	654 bp downstream
Tssr33606	transcription start site region 33606	669 bp downstream
Tssr33607	transcription start site region 33607	745 bp downstream
Tssr33608	transcription start site region 33608	803 bp downstream