rs107759693 SNP Detail

Summary

• ID
  rs107759693
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126342077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACAAAAGGG GACTCCCAAG AGAGTGTTCC CGGAGGATGG
  CTTCTTCTGT GGAAATCAAG GTAGAGGTGA TCAACACAAG AAAAGCCAGC TGGCTACAGC
  R
  CCTACTTGCC AACCTTCTAG CTGTCCTGGA CTGAGAAGGA TAAGCAAGCA TCTTTGGAGA
  TGCCACCTGT TTTCCCAGAG ATTAAACGAT CGGCAATGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147505133	ENSMUSSNP6245152	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107759693					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126342077 () rs orientation: forward

Symbol	Name	Function Class
Atp8b4	ATPase, class I, type 8B, member 4	Intron
Rr564346	regulatory region 564346	881 bp distal
Rr564347	regulatory region 564347	321 bp distal
Rr564348	regulatory region 564348	within coordinates
Rr564349	regulatory region 564349	440 bp proximal
Tssr632	transcription start site region 632	128 bp downstream
Tssr19934	transcription start site region 19934	1081 bp downstream
Tssr19935	transcription start site region 19935	161 bp downstream
Tssr26038	transcription start site region 26038	1983 bp upstream
Tssr26039	transcription start site region 26039	445 bp upstream
Tssr26040	transcription start site region 26040	432 bp upstream
Tssr26041	transcription start site region 26041	415 bp upstream
Tssr26042	transcription start site region 26042	363 bp upstream
Tssr26043	transcription start site region 26043	299 bp upstream
Tssr26044	transcription start site region 26044	225 bp upstream
Tssr26045	transcription start site region 26045	135 bp downstream
Tssr26046	transcription start site region 26046	474 bp downstream