rs107730996 SNP Detail

Summary

• ID
  rs107730996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:71149436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAAACTT TTATCTGTAT
  GATTGAGTTT ATTGTGTAGA GACATGTTTA TTTGAACAGA CTCACAAAAG CAAAGGGGGA
  AAGTGAAGAG ACCTTCTTCA CCGGAGACTT GAATAACTAA AGGCACGCGT TCTTGTCCCT
  ACAACCACTC AGAATTAACA GTATGGCTGG GTGGCTGGGT GGAGTAGAAA ATGCCTTTGA
  Y
  TCTAGAGCTT GGGAGGAAGA GAACTCTGTG AGTTCAAGGC CAGCATGGTC TATTTAGTGA
  GACAAGACAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAACACA CAACAATTAA
  ACTAACCATG ACTGAAAATA AAAACTGAAG AAAAAATACT AGAAAATACT AATTAAACTA
  AAATGAGGAA AAAACGGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	MSM/Ms
ss145887954	ENSMUSSNP5752306	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	MSM/Ms
rs107730996					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71149436 () rs orientation: forward

Symbol	Name	Function Class
Gm41610	predicted gene, 41610	353 bp upstream
Rr530331	regulatory region 530331	484 bp proximal
Rr530332	regulatory region 530332	1427 bp proximal
Tgif1	TGFB-induced factor homeobox 1	1764 bp downstream
Tssr149210	transcription start site region 149210	1562 bp upstream
Tssr149211	transcription start site region 149211	1485 bp upstream
Tssr149212	transcription start site region 149212	341 bp upstream
Tssr149213	transcription start site region 149213	65 bp downstream