rs107722309 SNP Detail

Summary

• ID
  rs107722309
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58963307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAATTTCA CATTTTCAAC
  ATGCAGTACA GCGCCATCTT AACACTTATT AATACACAGA AGTTTGTTCA TTCCTTTATA
  TTCTCTTTAC CCTCAGCCAT TTCTTGCTAG CTTGTTATTT TTGCAGAAGT TTGCAAATAC
  ATGCATCCTT TTTCCTTTCA TCTCTATGTA AAAGATGGTT TACTACATAC CTTACAATAG
  M
  CTGTCTTCCT TGACTCCATA GATCCTGGAG ATTCCCTGGT AGTCTTACGA CTTCTTAGGC
  TTTTGTTGTG TAGGTTTACT GTTGTCTGTT GGGATACTCA CTCATTAATA GATGTAGATG
  TTTGTGTTAT GTCCAGTTTT CTTGATATGG TTTACTCAGT ATTCCAGTGA GTAAACATGT
  ATTCGGTACT TGTCAAAATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135211460	ENSMUSSNP4187876	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs107722309					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58963307 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Med12l	mediator complex subunit 12-like			Intron
				Noncoding-Transcript-Variant
Rr577300	regulatory region 577300			723 bp distal