rs107717544 SNP Detail

Summary

• ID
  rs107717544
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172459835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTCCAAA CTGAGCTGAG
  GTGCAAAATA CTTACCAGGC CCTGAAGATG CGGCATGAAA AAGACTGGAC ATGCCTCATT
  AATAATTTGT TTCATATTGA TTCTATGTTG AAATAATATT TTTGACTTAT TGGATTAGTA
  CAAAATTAAC TTCACCTGCT TCTTTTTCAT CTTTTTCGTT TTTTGTTTTT GTTTTTTTTT
  W
  AAAACGTAGC TGCTAGTAAA ATTTAAAATT ACAAGTGTGT CTCTATGACA TTTGGACCTC
  TAGTAAAAGG GCTTTGAACT GATTCCGTCT GACATAGGCG CTCCCTGGAC TCCTGGAAGG
  ATTTCACTTG ACAGTACTCT CTCTCCAGCC TACTTGGCAC CACCTCTCCT AGCAGCATAG
  TTGACTTTAG TCAGGGAGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss120015547	PARCsnp_1.10916	PARC_SEQ	INBRED	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs107717544					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172459835 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	Intron
Gm35601	predicted gene, 35601	761 bp upstream
Rr396594	regulatory region 396594	625 bp upstream
Rr423641	regulatory region 423641	26 bp proximal
Rr423642	regulatory region 423642	490 bp proximal
Rr423643	regulatory region 423643	684 bp proximal
Rr423644	regulatory region 423644	789 bp proximal
Rr423645	regulatory region 423645	1537 bp proximal
Tssr10245	transcription start site region 10245	796 bp upstream
Tssr15247	transcription start site region 15247	523 bp downstream
Tssr15248	transcription start site region 15248	547 bp downstream
Tssr15249	transcription start site region 15249	663 bp downstream