rs107716185 SNP Detail

Summary

• ID
  rs107716185
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116392619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTTGTGT GTTTATGCCT
  TAGCATGTGT GGAGTGTGTG TGTGGTGTGT ATGTGTGTGG GGGGGTGTCT ATCTGTCTGT
  CTGTCTGCCT GTCTACCTGT GAGTGCCTCC AGAAAAGGAT ATCAAATCCT TTGGAGCTGG
  AATTATAGGT CTTTGTGACT GCTTGACATG GGTGCTGGGG TACAAACTCT GAGAGAACAG
  R
  TATGTGCTTT TAACCACTGT CTCTCATTCC ACACCCAGCT TTTTTGTTTG TTTTGTTTTT
  TGAGACAAGG GTTTCTTTAT GTAGCCCTGG AATTCTCTCT GTAGACCACT GGCCTTGAGC
  TCACAGAGAT CTGCCTGACT CTGCCCCTTC AATGTTGGGA TAAAAAGTGT GAGTCACCAC
  TACTTGGTCC CCACCTGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135670292	ENSMUSSNP3497152	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs107716185					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116392619 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Sass6	SAS-6 centriolar assembly protein			Intron
				Noncoding-Transcript-Variant
Trmt13	tRNA methyltransferase 13			Intron
				Noncoding-Transcript-Variant
Tssr31361	transcription start site region 31361			766 bp downstream
Tssr31362	transcription start site region 31362			736 bp downstream