rs107712367 SNP Detail

Summary

• ID
  rs107712367
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152590592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCATGGC TCATGCCTTT
  GAATTTGAAG CCGGCCAGAC AAGTGACACA GAAGCAGATA AAGTGTCACA GAGGTAACAA
  GGAGCAGCTA GAGTTTGCAG GGCATCCTGA GGGAGTGACA TTTGAGATGC TTCTTAAAAA
  GTGAGTGGGA CAAGCCAGAG GAAAGAGGGC AGGGCGTGGC GCTTTGACAG GTCCTGGAAA
  R
  GGCTGAGGTG CCCACTACCT GTGGGTGAGT AAGGAGAGAG AGATGGTAAT GCATATGCAT
  TGCCAAGCTA AGACCTTAAA GCATGTGGAT TGCCAAGGAC ATCCGGGAGG TTGCAACTGA
  CAAGAGGCTA GTGGGTACCT AGAGAAGGCA CACTTGCCTC AAAGCACTCA AATTAAACAC
  AAGAACACCG TGAGGCAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136104363	ENSMUSSNP6482106	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321029032	CHEV_3_152547919	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs107712367					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152590592 () rs orientation: forward

Symbol	Name	Function Class
D3Mit322	DNA Segment, Chr 3, Massachusetts Institute of Technology 322	1597 bp proximal
Rr587620	regulatory region 587620	1903 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron
Tssr32421	transcription start site region 32421	662 bp downstream
Tssr32422	transcription start site region 32422	589 bp downstream