rs107712218 SNP Detail

Summary

• ID
  rs107712218
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153564840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTTACCA CTTAAACTTT
  TCCTTGATCC CTTTCACACG TTGGGAATGA GGTTGTATGG GGCCTTGCCC TGAGGTCACC
  ACATTCTTTA TCCCATTTAG CATTAGGCTT TTCTTTAAAC TGTTTTATTT CCCTGAGCAC
  TGGATTTAGC TGCACTACAC TTCCTGGAGC TTCTTTTCTC TTCAGACTAT GCATATTCTA
  K
  TTCTCTTTAT CTAGCTTGCT CCTTTTCATT ATAGATCTGC ATAAAATTGA TTACTGGTAA
  CCACACTACT CAGTCATCTT GCAATACCCT CTGTCAAAGA CCTTCATCCA GAAACTCTTC
  AATTTAGCCT CTGGCAGATT TTTAGGACAA GAGCAGAAAG CAGCCACATT CTTTGTCAAA
  ACAGCACAAG AATGGTCTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148002161	ENSMUSSNP7224530	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss320564605	CHEV_2_153548656	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs107712218					SNP	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153564840 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Intron
Rr567732	regulatory region 567732	232 bp proximal
Rr567733	regulatory region 567733	1469 bp proximal