rs107708583 SNP Detail

Summary

• ID
  rs107708583
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116759922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAATCA AACAGCTCTT
  GCAGTGTTAA TGTTTGTTGT TCTTGTCCTT TTACAGTGAA GTCTCTGTGT TGTTGAGTCT
  TGGTGTCTTA GGGAATTAAC ATCTTTGCCG TCATGGACAT ATATAAAAAT TATTTCAGTG
  TAGGAGAGCA GTTAAAAGAT TATCTCTGAG TTTTTGTAAT TTTAATGCCT TTCAAAAAAT
  K
  AGATAACTCT TGAAAGTTCC CTGGGTACGG TGTGTTTTCT TTTCCTAGGA AGAAAGAATA
  GCAGGGGTGG CTTCCTGGGC AAGGCCAGGG CGGAGTAAGC TGGCATTTCC CAGGGTGTGC
  AGGAGGAGAG TGGTTGTATT GTTTCCATGG ACACGGAGGA ACTACTCCAT TTCCCCTCTA
  GGTGGTGACA AATGTGACTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135676571	ENSMUSSNP5311122	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107708583					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116759922 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930455H04Rik	RIKEN cDNA 4930455H04 gene			1994 bp upstream
Gm52613	predicted gene, 52613			921 bp upstream
Palmd	palmdelphin			Intron
				Noncoding-Transcript-Variant
Rr583813	regulatory region 583813			1559 bp distal
Rr583814	regulatory region 583814			within coordinates
Rr583815	regulatory region 583815			479 bp proximal
Rr583816	regulatory region 583816			513 bp proximal
Rr583817	regulatory region 583817			1904 bp proximal