rs107708046 SNP Detail

Summary

• ID
  rs107708046
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151764600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTGTGCA GTTTATAGGA TTAGGGAGGG CCAGCTAAGA
  GTCCCCATGA AGATAGTAAG CTGGTAACGG AGCCAAAGAG AGACTGTAGA AGGTGGATGC
  S
  CCTTCAAGGC TTGTTTTTTT TTTTTCACAG TGTTGCAAGG TGTGTAGTAA TAATACTAAT
  AGAAATATAC TCTAATGATG TTTCCTCTTT CAACACATG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145723784	ENSMUSSNP5907469	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107708046					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151764600 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700025G04Rik	RIKEN cDNA 1700025G04 gene			Intron
				mRNA-UTR
Gm28610	predicted gene 28610			1786 bp downstream
Rr420378	regulatory region 420378			790 bp distal
Rr420379	regulatory region 420379			1180 bp proximal