rs107697728 SNP Detail

Summary

• ID
  rs107697728
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172342126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACACCCAGT GGTCCCTACC CCAACACCAT CAACCCTGCT
  TCTGAAGTTC TATGCACTTC GGCTCTTTCT GCCTGGTTCA AGATTACTTT CTGTGTTTTG
  K
  GTTTCTCCTT TCTCCCCATT GCAGTTCAGT CTCTTGGGCA GTCATGAAGA ACAGGAAAGA
  GAAAAGGGGG GTTTTTGAAG ACAGATGGAA CGCAGCTAGC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss120011695	PARCsnp_1.19926	PARC_SEQ	INBRED	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs107697728					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172342126 () rs orientation: forward

Symbol	Name	Function Class
Gm37125	predicted gene, 37125	within coordinates
Gm57108	predicted gene, 57108	545 bp upstream
Gm70635	predicted gene, 70635	within coordinates
Rr396590	regulatory region 396590	1322 bp downstream
Rr396591	regulatory region 396591	225 bp downstream
Rr423601	regulatory region 423601	1357 bp distal
Rr423602	regulatory region 423602	1524 bp distal
Rr423603	regulatory region 423603	556 bp distal
Rr423604	regulatory region 423604	421 bp distal
Rr423605	regulatory region 423605	within coordinates
Rr423606	regulatory region 423606	349 bp proximal
Tssr302	transcription start site region 302	547 bp upstream
Tssr10235	transcription start site region 10235	1302 bp downstream
Tssr10236	transcription start site region 10236	412 bp downstream
Tssr15228	transcription start site region 15228	579 bp upstream