rs107694076 SNP Detail

Summary

• ID
  rs107694076
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153564570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCATGGCA GATATCATGG
  ATTCTCCAAT ACCATCCAGG CTTCATCTCA CAACTTTACA GAATGGCCTC ACTGGGCCTC
  TCTGCAGGGA CACCCCTGAC ACACACCTGT CCTTAGTGGC TTCTCTGAAC CATAAAGGAA
  GAGTCTATAA CTCCTTTCTT GCATTTTAGG TTCTAAAGCC AGAACCACGT GGCTGAGGCT
  R
  CCAACTTCTG CTGCTTTGCG GAGCTGCAAG TTGGGCCCTC CTTTTTAGTG ACATCCATTA
  ACGATAGTTT CTTTTACCAC TTAAACTTTT CCTTGATCCC TTTCACACGT TGGGAATGAG
  GTTGTATGGG GCCTTGCCCT GAGGTCACCA CATTCTTTAT CCCATTTAGC ATTAGGCTTT
  TCTTTAAACT GTTTTATTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148002125	ENSMUSSNP2303017	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320564598	CHEV_2_153548386	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs107694076					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153564570 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Intron
Rr567732	regulatory region 567732	502 bp proximal
Rr567733	regulatory region 567733	1739 bp proximal