rs107689388 SNP Detail

Summary

• ID
  rs107689388
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:32905423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGCATGG TGAGTGCAGC
  AATATATTGT GGGTCTTGTA TTTTGGAGAG AATGGACCAG GAATGGACCT CAGGGGATGG
  GTCTGAAGTC CTCCAGCATC CTTCACTAGC TTTTCTCATG TCCCTGCCTC CACCCCTACT
  TTGCTCTGGA TTAATTTCTA GTCCATCTTT CTTACACTGG TGGACACTTC CAAGGTAGAC
  M
  ATACAGAGTG AGGACCCCTG GGGTTCCCTC ATTGTCTGCT GGACTTGAGG CCTCTTGGGA
  AGCTCTGTCC AACGTCAATG CCATTTTTCT GTCAATCCAT ATCAGGGTTT CCATGTTTGC
  CTGGGGGTAA TCTCTGGTAT TCCTCTCCTA CCACCCATGA AGCAGGAGAG TTATGGGTTG
  TCTTCCTGCC TCTTGTTCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325362853	CHEV_17_32823394	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs107689388					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32905423 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cyp4f15	cytochrome P450, family 4, subfamily f, polypeptide 15			Intron
				Noncoding-Transcript-Variant
Rr525792	regulatory region 525792			760 bp distal
Tssr143733	transcription start site region 143733			853 bp downstream
Tssr143734	transcription start site region 143734			834 bp downstream
Tssr143735	transcription start site region 143735			806 bp downstream
Tssr143736	transcription start site region 143736			772 bp downstream
Tssr143737	transcription start site region 143737			343 bp downstream