rs107681380 SNP Detail

Summary

• ID
  rs107681380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172461785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTTCTGTC CCCCTCTCCA GAATCTTTTA ATGGCACACT
  TTCCTACAGT CATCCAGGAA ATGACAGTGT TACACAGCCA TCTTCACATT CTTCCAAACA
  Y
  TTTGTGTTTA AAACCCTGGG TATTTTCTTA ACCGGGGGCC TAGGGACATA CTGACCTAAG
  CCCACAAGAC CTGGGTATGA AGACATCCTA CCCTCCCTTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss120013348	PARCsnp_1.20752	PARC_SEQ	INBRED	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs107681380					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172461785 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	1281 bp upstream
Gm35601	predicted gene, 35601	within coordinates
Rr396594	regulatory region 396594	1024 bp downstream
Rr423641	regulatory region 423641	1580 bp distal
Rr423642	regulatory region 423642	1439 bp distal
Rr423643	regulatory region 423643	1162 bp distal
Rr423644	regulatory region 423644	313 bp distal
Rr423645	regulatory region 423645	392 bp distal
Tssr10245	transcription start site region 10245	1143 bp downstream
Tssr15247	transcription start site region 15247	1409 bp upstream
Tssr15248	transcription start site region 15248	1349 bp upstream
Tssr15249	transcription start site region 15249	1275 bp upstream