rs107681038 SNP Detail

Summary

• ID
  rs107681038
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36120775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCT GAGTGGCTGC CCTGGTGCAA
  M
  GTTCAAAGCT AGAACTTTGA AGTGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss134777637	ENSMUSSNP1017952	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs107681038					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36120775 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Acad9	acyl-Coenzyme A dehydrogenase family, member 9			Intron
				Noncoding-Transcript-Variant
Cpgi13079	CpG island 13079			107 bp distal
Rr397642	regulatory region 397642			1779 bp downstream
Rr575304	regulatory region 575304			1564 bp distal
Rr575305	regulatory region 575305			1424 bp distal
Rr575306	regulatory region 575306			1244 bp distal
Rr575307	regulatory region 575307			549 bp distal
Tssr28859	transcription start site region 28859			622 bp downstream
Tssr28860	transcription start site region 28860			563 bp downstream
Tssr28861	transcription start site region 28861			524 bp downstream
Tssr28862	transcription start site region 28862			508 bp downstream