rs107667839 SNP Detail

Summary

• ID
  rs107667839
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:144921150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCAAGCCTA GAGAAGATGG CTCTCTAGGG GTAAGAGAGG
  CGAAGAGTGT CCCCTACAAG AAGGAAAAGT TGGGAAGAGA GGGACCCTGG GGACAAACCT
  R
  ATGTCCCCAC CCAGAGGTGA CCCCAGAGGG GATGGAGGCA CTGAGGGAAG GGACGCCGCC
  CCACTAGGGG TGTGCTGAAG AGACACTCGC ACGTTGGAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147848377	ENSMUSSNP6939960	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss321412785	CHEV_4_144784483	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs107667839					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144921150 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15267	CpG island 15267			within coordinates
Rr398672	regulatory region 398672			337 bp upstream
Rr604318	regulatory region 604318			1363 bp distal
Rr604319	regulatory region 604319			within coordinates
Rr604320	regulatory region 604320			211 bp distal
Rr604321	regulatory region 604321			415 bp proximal
Rr604322	regulatory region 604322			507 bp proximal
Tssr44481	transcription start site region 44481			373 bp downstream
Tssr44482	transcription start site region 44482			387 bp downstream
Tssr44483	transcription start site region 44483			419 bp downstream
Vps13d	vacuolar protein sorting 13D			Intron
				Noncoding-Transcript-Variant